MTME Rice Breeding Data - Genomic Relationship Matrix

Genomic Relationship Matrix

Download URL: https://uatweb.datansw.links.com.au/data/dataset/732d8000-5f6e-4321-a04a-c30948e05d34/resource/486d096f-e715-4ccb-b0ee-bea4cab1911f/download/grm.csv

This genomic relationship matrix was constructed from the filtered and centred molecular marker data.

Details
Last updated	13/12/2022
Date Created	13/12/2022
File format	CSV
Licence	Creative Commons Attribution

Table

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Additional Information

Field	Value
Title	Genomic Relationship Matrix
Data last updated	13/12/2022
Metadata last updated	13/12/2022
Format	CSV
License	Creative Commons Attribution
Size	873.86 KB

Data Dictionary

Label	Type	Description
Genotype	text
Cypress	text
Diamante	text
Doongara	text
Jefferson	text
Kyeema	text
L205	text
Langi	text
Lemont	text
Topaz	text
YRB16-V020	text
YRB16-V021	text
YRB16-V022	text
YRB16-V025	text
YRB16-V026	text
YRB16-V027	text
YRB16-V029	text
YRB16-V030	text
YRB16-V031	text
YRB16-V032	text
YRB16-V033	text
YRB16-V034	text
YRB16-V035	text
YRB16-V036	text
YRB16-V037	text
YRB16-V038	text
YRB16-V039	text
YRB16-V040	text
YRB16-V041	text
YRB16-V042	text
YRB16-V043	text
YRB16-V053	text
YRB16-V062	text
YRD16-V013	text
YRD16-V014	text
YRD16-V015	text
YRD16-V016	text
YRD16-V019	text
YRD16-V022	text
YRD16-V025	text
YRD16-V028	text
YRD16-V030	text
YRD16-V032	text
YRD16-V037	text
YRD16-V038	text
YRD16-V039	text
YRD16-V040	text
YRD16-V041	text
YRD16-V042	text
YRD16-V043	text
YRD16-V044	text
YRD16-V045	text
YRD16-V046	text
YRD16-V047	text
YRD16-V051	text
YRI14-V042	text
YRI16-V012	text
YRI16-V013	text
YRI16-V015	text
YRI16-V016	text
YRI16-V017	text
YRI16-V018	text
YRI16-V019	text
YRI16-V024	text
YRI16-V026	text
YRI16-V028	text
YRI16-V029	text
YRI16-V030	text
YRI16-V031	text
YRI16-V037	text
YRI16-V038	text
YRI16-V039	text
YRI16-V040	text
YRI16-V041	text
YRI16-V042	text
YRI16-V043	text
YRI16-V044	text
YRI16-V045	text
YRI16-V046	text
YRI16-V047	text
YRI16-V048	text
YRI16-V050	text
YRI16-V051	text
YRI16-V053	text
YRI16-V055	text
YRI16-V057	text
YRI16-V058	text
YRI16-V059	text
YRI16-V060	text
YRI16-V061	text
YRL118	text
YRL125_PS04_19	text
YRL126	text
YRL127	text
YRL128	text
YRL39	text
YSC16-01-223	text
YSC16-01-340	text
YSC16-01-360	text
YSC16-02-194	text
YSC16-02-209	text
YSC16-02-224	text
YSC16-02-261	text
YSC16-02-351	text
YSC16-02-361	text
YSC16-02-372	text
YSC16-03-127	text
YSC16-03-142	text
YSC16-03-143	text
YSC16-03-194	text
YSC16-03-310	text
YSC16-03-369	text
YSC16-04-142	text
YSC16-04-143	text
YSC16-04-223	text
YSC16-04-224	text
YSC16-04-360	text
YSC16-05-142	text
YSC16-05-194	text
YSC16-05-259	text
YSC16-05-301	text
YSC16-05-363	text
YSC16-05-369	text
YSC16-05-372	text
YSC16-06-121	text
YSC16-06-143	text
YSC16-06-182	text
YSC16-06-358	text
YSC16-06-361	text
YSC16-06-370	text
YSC16-06-371	text
YSC16-07-121	text
YSC16-07-125	text
YSC16-07-141	text
YSC16-07-142	text
YSC16-07-205	text
YSC16-07-212	text
YSC16-07-216	text
YSC16-07-361	text
YSC16-07-370	text
YSC16-07-371	text
YSC16-07-372	text
YSC16-07-377	text
YSC16-08-111	text
YSC16-08-118	text
YSC16-08-141	text
YSC16-08-211	text
YSC16-08-260	text
YSC16-08-261	text
YSC16-08-264	text
YSC16-08-353	text
YSC16-08-359	text
YSC16-08-369	text
YSC16-08-370	text
YSC16-08-371	text
YSC16-09-127	text
YSC16-09-130	text
YSC16-09-142	text
YSC16-09-212	text
YSC16-09-216	text
YSC16-09-358	text
YSC16-09-359	text
YSC16-09-369	text
YSC16-10-111	text
YSC16-10-223	text
YSC16-10-362	text
YSC16-10-377	text
YSC16-10-389	text
YSE16-13-035	text
YSE16-13-060	text
YSE16-13-068	text
YSE16-13-085	text
YSE16-13-091	text
YSE16-13-101	text
YSE16-13-108	text
YSE16-13-134	text
YSE16-13-158	text
YSE16-13-208	text
YSE16-13-213	text
YSE16-13-232	text
YSE16-13-235	text
YSE16-14-240	text
YSE16-17-046	text
YSE16-17-138	text
YSE16-17-147	text
YUB16-V011	text
YUB16-V013	text
YUB16-V014	text
YUB16-V020	text
YUB16-V021	text
YUB16-V024	text
YUB16-V027	text
YUB16-V034	text
YUB16-V035	text
YUB16-V078	text
YUB16-V092	text
YUD16-V012	text
YUD16-V013	text
YUD16-V014	text
YUD16-V016	text
YUD16-V018	text
YUD16-V019	text
YUD16-V020	text
YUD16-V021	text
YUD16-V023	text
YUD16-V024	text
YUD16-V025	text
YUD16-V026	text
YUD16-V027	text
YUD16-V029	text
YUD16-V031	text
YUD16-V032	text
YUD16-V033	text
YUD16-V034	text
YUD16-V035	text
YUD16-V036	text
YUD16-V037	text
YUD16-V042	text
YUD16-V044	text
YUD16-V048	text
YUF16-V021	text
YUF16-V022	text
YUF16-V023	text
YUF16-V024	text
YUF16-V025	text
YUF16-V028	text
YUF16-V029	text
YUF16-V030	text
YUF16-V031	text
YUF16-V033	text
YUF16-V034	text
YUF16-V035	text
YUF16-V036	text
YUF16-V038	text
YUF16-V046	text
YUF16-V054	text
YUF16-V056	text
YUF16-V060	text
YUF16-V061	text
YUF16-V062	text
YUF16-V067	text
YUF16-V068	text
YUF16-V069	text
YUF16-V083	text
YUF16-V088	text
YUF16-V093	text
YUF16-V105	text
YUF16-V106	text
YUF16-V107	text
YUF16-V109	text
YUF16-V111	text
YUF16-V116	text
YUF16-V118	text
YUF16-V121	text
YUF16-V123	text
YUF16-V124	text
YUF16-V129	text
YUF16-V131	text
YUF16-V133	text
YUF16-V134	text
YUI16-V013	text
YUI16-V014	text
YUI16-V020	text
YUI16-V026	text
YUI16-V036	text
YUI16-V054	text
YUI16-V055	text
YUI16-V056	text

CKAN Data API

Access resource data via a web API with powerful query support. Further information in the main CKAN Data API and DataStore documentation.

Code examples:

curl JavaScript PowerShell Python R

Querying

Get 5 results containing "jones" in any field:

curl https://uatweb.datansw.links.com.au/data/api/action/datastore_search \
  -H"Authorization:$API_TOKEN" -d '
{
  "resource_id": "486d096f-e715-4ccb-b0ee-bea4cab1911f",
  "limit": 5,
  "q": "jones"
}'

const resp = await fetch(`https://uatweb.datansw.links.com.au/data/api/action/datastore_search`, {
    method: 'POST',
    headers: {
        'content-type': 'application/json',
        authorization: API_TOKEN
    },
    body: JSON.stringify({
        resource_id: '486d096f-e715-4ccb-b0ee-bea4cab1911f',
        limit: 5,
        q: 'jones'
    })
})
await resp.json()

$json = @'
{
  "resource_id": "486d096f-e715-4ccb-b0ee-bea4cab1911f",
  "limit": 5,
  "q": "jones"
}
'@
$response = Invoke-RestMethod https://uatweb.datansw.links.com.au/data/api/action/datastore_search`
  -Method Post -Body $json -Headers @{"Authorization"="$API_TOKEN"}
$response.result.records

(using the ckanapi client library)

from ckanapi import RemoteCKAN

rc = RemoteCKAN('https://uatweb.datansw.links.com.au/data/', apikey=API_TOKEN)
result = rc.action.datastore_search(
    resource_id="486d096f-e715-4ccb-b0ee-bea4cab1911f",
    limit=5,
    q="jones",
)
print(result['records'])

library(httr2)

req <- request("https://uatweb.datansw.links.com.au/data/api/action/datastore_search")
result <- req %>% 
    req_headers(Authorization = API_TOKEN) %>% 
    req_body_json(list(
        resource_id = '486d096f-e715-4ccb-b0ee-bea4cab1911f',
        limit = 5,
        q = 'jones'))
    req_perform %>% 
    resp_body_json

Get results with either "watershed" or "survey" as subject and "active" as its stage:

curl https://uatweb.datansw.links.com.au/data/api/action/datastore_search \
-H"Authorization:$API_TOKEN" -d '
{
"resource_id": "486d096f-e715-4ccb-b0ee-bea4cab1911f",
  "filters": {
    "subject": ["watershed", "survey"],
    "stage": "active"
  }
}'

const resp = await fetch(`https://uatweb.datansw.links.com.au/data/api/action/datastore_search`, {
    method: 'POST',
    headers: {
        'content-type': 'application/json',
        authorization: API_TOKEN
    },
    body: JSON.stringify({resource_id: '486d096f-e715-4ccb-b0ee-bea4cab1911f', filters: {
        subject: ['watershed', 'survey'],
        stage: 'active'
    }})})
await resp.json()

$json = @'
{
  "resource_id": "486d096f-e715-4ccb-b0ee-bea4cab1911f",
  "filters": {
    "subject": ["watershed", "survey"],
    "stage": "active"
  }
}
'@
$response = Invoke-RestMethod https://uatweb.datansw.links.com.au/data/api/action/datastore_search`
  -Method Post -Body $json -Headers @{"Authorization"="$API_TOKEN"}
$response.result.records

from ckanapi import RemoteCKAN

rc = RemoteCKAN('https://uatweb.datansw.links.com.au/data/', apikey=API_TOKEN)
result = rc.action.datastore_search(
    resource_id="486d096f-e715-4ccb-b0ee-bea4cab1911f",
    filters={
      "subject": ["watershed", "survey"],
      "stage": "active",
    },
)
print(result['records'])

library(httr2)

req <- request("https://uatweb.datansw.links.com.au/data/api/action/datastore_search")
result <- req %>% 
    req_headers(Authorization = API_TOKEN) %>% 
    req_body_json(list(
        resource_id='486d096f-e715-4ccb-b0ee-bea4cab1911f', 
        filters = list(
            subject = list("watershed", "survey"), 
            stage = "active")))
    req_perform %>% 
    resp_body_json

Using the API with this Web Browser

Some API endpoints may be accessed using a GET query string.

Query example (first 5 results)

https://uatweb.datansw.links.com.au/data/api/action/datastore_search?resource_id=486d096f-e715-4ccb-b0ee-bea4cab1911f&limit=5

Query example (results containing 'jones')

https://uatweb.datansw.links.com.au/data/api/action/datastore_search?resource_id=486d096f-e715-4ccb-b0ee-bea4cab1911f&q=jones